Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ59887.1Replication initiation and membrane attachment. (332 aa)    
Predicted Functional Partners:
dnaC_2
DNA replication protein DnaC.
 
  
 0.967
OPJ62326.1
Hypothetical protein.
  
     0.768
mreD
Rod shape-determining protein MreD.
  
     0.749
OPJ62999.1
CYTH domain protein.
  
     0.733
ssbB
Single-stranded DNA-binding protein B.
 
     0.704
OPJ61691.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
 0.703
OPJ65579.1
Tetratricopeptide repeat protein.
  
     0.700
OPJ64117.1
Endodeoxyribonuclease RusA.
 
    0.690
OPJ64101.1
LysM domain protein.
  
     0.652
OPJ59216.1
Hypothetical protein.
  
     0.652
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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