STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ59887.1Replication initiation and membrane attachment. (332 aa)    
Predicted Functional Partners:
dnaC_2
DNA replication protein DnaC.
 
  
 0.963
OPJ62326.1
Hypothetical protein.
  
     0.768
mreD
Rod shape-determining protein MreD.
  
     0.749
OPJ62999.1
CYTH domain protein.
  
     0.733
ssbB
Single-stranded DNA-binding protein B.
 
     0.704
OPJ65579.1
Tetratricopeptide repeat protein.
  
     0.700
OPJ61691.1
Anaerobic benzoate catabolism transcriptional regulator.
 
     0.696
OPJ64117.1
Endodeoxyribonuclease RusA.
 
    0.694
OPJ64101.1
LysM domain protein.
  
     0.652
OPJ59216.1
Hypothetical protein.
  
     0.652
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.