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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ59893.1NAD-dependent malic enzyme. (394 aa)    
Predicted Functional Partners:
pta_2
Phosphate acetyltransferase.
 
 
 0.949
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.935
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.933
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.933
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.915
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.915
fumB
Fumarate hydratase class I, anaerobic.
 
 
 0.906
cfiB_1
2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 0.898
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.864
ttdA
L(+)-tartrate dehydratase subunit alpha.
  
 
 0.860
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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