Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ywhB2-hydroxymuconate tautomerase; Belongs to the 4-oxalocrotonate tautomerase family. (64 aa)    
Predicted Functional Partners:
hxlR_10
HTH-type transcriptional activator HxlR.
 
     0.706
adhE_1
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.455
adhE_3
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.455
puuB_1
Gamma-glutamylputrescine oxidoreductase.
    
 0.431
puuB_2
Gamma-glutamylputrescine oxidoreductase.
    
 0.431
ilvK
Branched-chain-amino-acid aminotransferase 2.
    
 0.422
dat
D-alanine aminotransferase.
    
 0.422
ilvE
Branched-chain-amino-acid aminotransferase.
    
 0.422
hcnC
Hydrogen cyanide synthase subunit HcnC precursor.
    
 0.422
puuB_3
Gamma-glutamylputrescine oxidoreductase.
    
 0.422
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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