Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OPJ59745.1Hypothetical protein. (365 aa)    
Predicted Functional Partners:
OPJ59746.1
Hypothetical protein.
   
0.982
fldI
R-phenyllactate dehydratase activator.
 
   
 0.962
cnbCb
2-aminophenol 1,6-dioxygenase subunit beta.
  
     0.562
OPJ62315.1
Membrane protein of unknown function.
 
     0.539
OPJ59065.1
Hypothetical protein; S-layer homology domain.
  
     0.526
hgdC_3
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
 
   
 0.489
OPJ59747.1
Endoglucanase precursor.
       0.444
ytxC
YtxC-like family protein.
  
     0.435
OPJ58469.1
Late competence development protein ComFB.
  
     0.422
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.
  
     0.407
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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