Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
lyc_3Autolytic lysozyme. (344 aa)    
Predicted Functional Partners:
lytA_11
Autolysin.
  
     0.660
OPJ59370.1
Bacteriophage holin.
       0.556
OPJ59372.1
Metal-dependent hydrolase.
       0.541
OPJ62638.1
CAAX amino terminal protease self- immunity.
  
     0.540
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.494
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
  0.476
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
  0.466
OPJ66046.1
Choline/ethanolamine kinase.
  
     0.447
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor.
  
  
  0.428
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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