OPJ59298.1 protein (Clostridium chromiireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OPJ59298.1

HD domain protein. (258 aa)

Predicted Functional Partners:

ribBA

0.712

nifJ_2

0.463

nifJ_3

0.463

metH_1

0.458

metH_2

0.458

barA_2

0.439

glnA_2

0.400

Your Current Organism:

Clostridium chromiireducens

NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ59298.1	barA_2	CLCHR_35320	CLCHR_16870	HD domain protein.	Signal transduction histidine-protein kinase BarA.	0.439
OPJ59298.1	glnA_2	CLCHR_35320	CLCHR_31520	HD domain protein.	Glutamine synthetase.	0.400
OPJ59298.1	metH_1	CLCHR_35320	CLCHR_28700	HD domain protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.458
OPJ59298.1	metH_2	CLCHR_35320	CLCHR_38370	HD domain protein.	Methionine synthase.	0.458
OPJ59298.1	nifJ_2	CLCHR_35320	CLCHR_11980	HD domain protein.	Pyruvate-flavodoxin oxidoreductase.	0.463
OPJ59298.1	nifJ_3	CLCHR_35320	CLCHR_46340	HD domain protein.	Pyruvate-flavodoxin oxidoreductase.	0.463
OPJ59298.1	ribBA	CLCHR_35320	CLCHR_43820	HD domain protein.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.712
barA_2	OPJ59298.1	CLCHR_16870	CLCHR_35320	Signal transduction histidine-protein kinase BarA.	HD domain protein.	0.439
barA_2	glnA_2	CLCHR_16870	CLCHR_31520	Signal transduction histidine-protein kinase BarA.	Glutamine synthetase.	0.569
barA_2	metH_1	CLCHR_16870	CLCHR_28700	Signal transduction histidine-protein kinase BarA.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.476
barA_2	metH_2	CLCHR_16870	CLCHR_38370	Signal transduction histidine-protein kinase BarA.	Methionine synthase.	0.476
barA_2	ribBA	CLCHR_16870	CLCHR_43820	Signal transduction histidine-protein kinase BarA.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.886
glnA_2	OPJ59298.1	CLCHR_31520	CLCHR_35320	Glutamine synthetase.	HD domain protein.	0.400
glnA_2	barA_2	CLCHR_31520	CLCHR_16870	Glutamine synthetase.	Signal transduction histidine-protein kinase BarA.	0.569
glnA_2	nifJ_2	CLCHR_31520	CLCHR_11980	Glutamine synthetase.	Pyruvate-flavodoxin oxidoreductase.	0.665
glnA_2	nifJ_3	CLCHR_31520	CLCHR_46340	Glutamine synthetase.	Pyruvate-flavodoxin oxidoreductase.	0.665
metH_1	OPJ59298.1	CLCHR_28700	CLCHR_35320	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	HD domain protein.	0.458
metH_1	barA_2	CLCHR_28700	CLCHR_16870	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Signal transduction histidine-protein kinase BarA.	0.476
metH_1	metH_2	CLCHR_28700	CLCHR_38370	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Methionine synthase.	0.949
metH_1	nifJ_2	CLCHR_28700	CLCHR_11980	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Pyruvate-flavodoxin oxidoreductase.	0.918