Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ59310.1Hypothetical protein. (356 aa)    
Predicted Functional Partners:
fruA_2
Fructan beta-fructosidase precursor.
   
 0.802
OPJ63310.1
Subtilase family protein.
  
 0.718
lytA_12
Autolysin.
  
 0.718
OPJ58711.1
Thermophilic serine proteinase precursor; Belongs to the peptidase S8 family.
  
 0.718
OPJ58141.1
Hypothetical protein.
  
 0.718
OPJ55715.1
Subtilase family protein.
  
 0.718
OPJ62808.1
Hypothetical protein.
 
    0.716
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor.
    
 0.715
spoIIIE
DNA translocase SpoIIIE.
   
 
 0.713
OPJ59305.1
Hypothetical protein.
    
 
 0.682
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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