Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
estBEsterase EstB. (406 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.808
spoVD_2
Stage V sporulation protein D.
    
 0.797
spoVD_3
Stage V sporulation protein D.
    
 0.797
ponA
Penicillin-binding protein 1A/1B.
     
 0.787
penA
Penicillin-binding protein 2B.
    
 0.775
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.775
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.769
guaB_3
Inosine-5'-monophosphate dehydrogenase.
     
 0.766
xyl3A
Xylan 1,4-beta-xylosidase precursor.
 
 
 0.728
bglX
Periplasmic beta-glucosidase precursor; Belongs to the glycosyl hydrolase 3 family.
  
 
 0.693
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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