Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cytRHTH-type transcriptional repressor CytR. (336 aa)    
Predicted Functional Partners:
sacX
Negative regulator of SacY activity.
  
 
 0.792
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.792
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.792
bglF_4
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.792
ptsG_4
PTS system glucose-specific EIICBA component.
    
 0.791
ptsG_5
PTS system glucose-specific EIICBA component.
    
 0.791
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.786
ptsH
Phosphocarrier protein HPr.
   
 
 0.698
malQ_2
4-alpha-glucanotransferase.
    
 0.686
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.610
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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