STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
polC_1DNA polymerase III PolC-type. (277 aa)    
Predicted Functional Partners:
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.867
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.807
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
  0.807
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.625
sacX
Negative regulator of SacY activity.
    
  0.582
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
    
  0.582
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
    
  0.582
ptsG_4
PTS system glucose-specific EIICBA component.
    
  0.582
bglF_4
PTS system beta-glucoside-specific EIIBCA component.
    
  0.582
ptsG_5
PTS system glucose-specific EIICBA component.
    
  0.582
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.