Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ade_2Adenine deaminase. (439 aa)    
Predicted Functional Partners:
mtaD
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
 
 
 0.583
fchA
Methenyltetrahydrofolate cyclohydrolase.
  
 
  0.569
yvoA
HTH-type transcriptional repressor YvoA.
 
 
 0.546
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
  
 
 0.521
gmuR
HTH-type transcriptional regulator GmuR.
  
 
 0.485
treR_1
Trehalose operon transcriptional repressor.
  
 
 0.485
treR_2
Trehalose operon transcriptional repressor.
  
 
 0.485
kdgR_2
Transcriptional regulator KdgR.
    
 0.479
kdgR_3
Transcriptional regulator KdgR.
    
 0.479
OPJ58636.1
Hypothetical protein.
       0.461
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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