Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yjmB_4Putative symporter YjmB. (469 aa)    
Predicted Functional Partners:
nrdA
Ribonucleoside-diphosphate reductase 1 subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.768
ptsG_1
PTS system glucose-specific EIICBA component.
 
    
 0.727
ptsG_4
PTS system glucose-specific EIICBA component.
 
    
 0.627
OPJ58412.1
HIT domain protein.
       0.625
xynB_3
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.575
OPJ62512.1
Beta-galactosidase BoGH2A precursor; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.570
uxaC_3
Uronate isomerase.
 
   
 0.534
uxaB_1
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
  
  
 0.531
xynB_4
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.493
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.480
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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