Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
eryGErythromycin 3''-O-methyltransferase. (185 aa)    
Predicted Functional Partners:
OPJ55700.1
Tetratricopeptide repeat protein.
 
     0.713
OPJ63327.1
Cadherin-like beta sandwich domain protein.
  
     0.671
OPJ54673.1
Signal peptidase (SPase) II.
  
   
 0.634
OPJ57513.1
Bacterial SH3 domain protein.
  
     0.617
lytA_6
Autolysin.
  
     0.613
toxA_1
Toxin A.
  
     0.611
OPJ60070.1
Von Willebrand factor type A domain protein.
   
 0.602
lytB_6
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.600
lytA_13
Autolysin.
 
     0.597
OPJ62313.1
Hypothetical protein.
  
     0.593
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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