Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpfG_13Cyclic di-GMP phosphodiesterase response regulator RpfG. (417 aa)    
Predicted Functional Partners:
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.712
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.712
yeaP
Putative diguanylate cyclase YeaP.
 
 
 0.686
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.671
ydaM_1
Putative diguanylate cyclase YdaM.
 
 
 0.661
ydaM_2
Putative diguanylate cyclase YdaM.
  
 
 0.651
cph2_3
Phytochrome-like protein cph2.
 
 
 0.641
ycdT_1
Putative diguanylate cyclase YcdT.
  
 
 0.614
cdpA
Cyclic di-GMP phosphodiesterase CdpA.
 
 
 0.606
ycdT_4
Putative diguanylate cyclase YcdT.
  
 
 0.598
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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