STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licT_2Transcription antiterminator LicT. (282 aa)    
Predicted Functional Partners:
bglF_4
PTS system beta-glucoside-specific EIIBCA component.
 
 
 0.968
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
 
 0.914
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
 
 
 0.905
sacX
Negative regulator of SacY activity.
 
 
 0.841
bglH_5
aryl-phospho-beta-D-glucosidase BglH; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.813
bglF_3
PTS system beta-glucoside-specific EIIBCA component.
 
 0.802
ptsG_4
PTS system glucose-specific EIICBA component.
 
 
 0.798
ptsG_5
PTS system glucose-specific EIICBA component.
 
 
 0.758
fruA_1
PTS system fructose-specific EIIABC component.
  
 
 0.709
fruA_3
PTS system fructose-specific EIIABC component.
  
 
 0.709
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.