STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph2_7Phytochrome-like protein cph2. (412 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.996
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.987
cph2_2
Phytochrome-like protein cph2.
 
 0.986
cph2_6
Phytochrome-like protein cph2.
 
0.986
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.984
rpfG_7
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.983
cph2_1
Phytochrome-like protein cph2.
 
0.982
cdpA
Cyclic di-GMP phosphodiesterase CdpA.
 
0.982
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
0.982
yeaP
Putative diguanylate cyclase YeaP.
 
 0.982
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.