Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cph2_7Phytochrome-like protein cph2. (412 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.992
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.985
cph2_2
Phytochrome-like protein cph2.
 
 0.984
cdpA
Cyclic di-GMP phosphodiesterase CdpA.
 
0.981
yeaP
Putative diguanylate cyclase YeaP.
 
 0.979
cph2_6
Phytochrome-like protein cph2.
 
0.970
pleD_2
Response regulator PleD.
 
 0.969
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.964
cph2_1
Phytochrome-like protein cph2.
 
0.964
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
0.964
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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