Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ57489.15' nucleotidase, deoxy (pyrimidine), cytosolic type C protein; Belongs to the 5'(3')-deoxyribonucleotidase family. (192 aa)    
Predicted Functional Partners:
OPJ60273.1
Hypothetical protein.
  
     0.539
erpA
Iron-sulfur cluster insertion protein ErpA.
  
     0.525
OPJ64117.1
Endodeoxyribonuclease RusA.
  
     0.524
glpQ1_1
Putative glycerophosphoryl diester phosphodiesterase 1.
   
    0.481
glpQ1_2
Putative glycerophosphoryl diester phosphodiesterase 1.
   
    0.481
OPJ61690.1
Tetratricopeptide repeat protein.
  
     0.475
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.461
trpP
Putative tryptophan transport protein.
  
     0.453
cheV
Chemotaxis protein CheV.
  
     0.443
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
   
    0.427
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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