Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ57411.1Metal-dependent hydrolase. (212 aa)    
Predicted Functional Partners:
mtlR
Transcriptional regulator MtlR.
 
  
 0.663
ulaA
Ascorbate-specific permease IIC component UlaA.
  
 
 0.610
licR_1
Putative licABCH operon regulator.
    
 0.605
ulaC
Ascorbate-specific phosphotransferase enzyme IIA component.
    
 0.605
licR_2
Putative licABCH operon regulator.
    
 0.605
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
  
 
 0.593
psd
Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
   0.584
OPJ64266.1
3-hexulose-6-phosphate synthase.
    
 0.552
ctsR
Transcriptional regulator CtsR; Belongs to the CtsR family.
       0.544
OPJ57413.1
UvrB/uvrC motif protein.
  
    0.537
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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