Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57355.1Hypothetical protein. (238 aa)    
Predicted Functional Partners:
OPJ58715.1
Putative lyase.
 
     0.527
pipB2
Secreted effector protein pipB2.
  
     0.472
pyrK_3
Dihydroorotate dehydrogenase B, electron transfer subunit.
       0.419
gltD_4
Glutamate synthase small chain.
       0.419
OPJ58596.1
Hypothetical protein.
 
     0.409
ilvB_2
Acetolactate synthase isozyme 1 large subunit.
  
    0.408
spoIIAB_2
Anti-sigma F factor.
       0.406
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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