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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbPPhosphoserine phosphatase RsbP. (606 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.994
cheV
Chemotaxis protein CheV.
 
 0.993
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 0.993
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 0.993
rpfC_1
Sensory/regulatory protein RpfC.
 
 0.993
cdpA
Cyclic di-GMP phosphodiesterase CdpA.
  
 0.991
OPJ64736.1
Stage II sporulation protein SpoIIE.
 
 0.990
cph2_4
Phytochrome-like protein cph2.
  
 0.989
cph2_2
Phytochrome-like protein cph2.
 
 0.986
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
 
 0.986
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.