Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgdA_5peptidoglycan-N-acetylglucosamine deacetylase. (313 aa)    
Predicted Functional Partners:
OPJ65591.1
Hypothetical protein.
  
 
 0.585
arnT_1
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.585
arnT_2
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.585
OPJ57329.1
Hypothetical protein.
  
 
 0.585
epsH_2
Putative glycosyltransferase EpsH.
 
 
 0.433
celH
Endoglucanase H precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.424
dexA
Dextranase precursor.
    
 0.418
dex
Dextranase precursor.
    
 0.418
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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