Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
OPJ56692.1Beta-lactamase precursor. (258 aa)    
Predicted Functional Partners:
OPJ64261.1
Penicillin acylase precursor.
    
  0.764
pfkA1
6-phosphofructokinase 1; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
       0.670
OPJ61694.1
Hypothetical protein.
  
     0.621
penA
Penicillin-binding protein 2B.
 
  
 0.591
OPJ61690.1
Tetratricopeptide repeat protein.
  
     0.578
ykfA_3
Putative murein peptide carboxypeptidase.
 
  
  0.578
ykfA_2
Putative murein peptide carboxypeptidase.
 
  
  0.576
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
  
  0.565
spoVD_2
Stage V sporulation protein D.
  
 
 0.556
spoVD_3
Stage V sporulation protein D.
  
 
 0.556
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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