Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pipB2Secreted effector protein pipB2. (212 aa)    
Predicted Functional Partners:
frzE
Gliding motility regulatory protein.
 
 
 0.866
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.792
OPJ58596.1
Hypothetical protein.
  
     0.753
OPJ59463.1
Hypothetical protein.
  
     0.694
ycdT_3
Putative diguanylate cyclase YcdT.
 
 
 0.691
OPJ65856.1
Hypothetical protein.
  
 
   0.654
ywaC_1
GTP pyrophosphokinase YwaC.
  
  
  0.645
OPJ56102.1
Hypothetical protein.
  
 
 0.613
tcaR
HTH-type transcriptional regulator TcaR.
  
     0.602
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
    
 0.600
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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