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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56596.1Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. (262 aa)    
Predicted Functional Partners:
OPJ62369.1
Putative phosphatase.
 
 
  0.809
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.785
OPJ56649.1
Putative phosphatase.
  
     0.720
ywpJ_2
Putative phosphatase YwpJ.
  
     0.712
udk_1
Uridine kinase.
   
 
  0.554
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.553
manX_5
PTS system mannose-specific EIIAB component.
    
 0.518
rfbF
Glucose-1-phosphate cytidylyltransferase.
  
 
 0.506
lexA_2
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
  
  
 0.484
gmuF
Putative mannose-6-phosphate isomerase GmuF.
  
 
 0.478
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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