Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
livH_4High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (297 aa)    
Predicted Functional Partners:
OPJ55697.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
OPJ55699.1
Leu/Ile/Val-binding protein homolog 3 precursor.
 
 
 0.998
OPJ59195.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.990
livF_3
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
 0.984
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.959
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.959
braC_1
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.957
braC_2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.957
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
 0.932
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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