Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhdG_3Putative amino acid permease YhdG. (441 aa)    
Predicted Functional Partners:
eutB
Ethanolamine ammonia-lyase heavy chain.
 
  
 0.891
eutC
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
 
  
 0.823
yhdG_2
Putative amino acid permease YhdG.
  
   
 0.814
OPJ55482.1
Reactivating factor for ethanolamine ammonia lyase.
 
     0.657
nadE_1
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.643
nplT_1
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
   
 0.581
OPJ65714.1
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
   
 0.581
malL_1
Oligo-1,6-glucosidase.
   
 0.581
treA
Trehalose-6-phosphate hydrolase.
   
 0.581
malL_2
Oligo-1,6-glucosidase.
   
 0.581
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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