STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54638.1Phage integrase family protein; Belongs to the 'phage' integrase family. (165 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.780
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
  0.780
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.779
prs_2
Ribose-phosphate pyrophosphokinase.
   
    0.511
pta_1
Phosphate acetyltransferase.
    
 0.477
pta_2
Phosphate acetyltransferase.
    
 0.477
immA
Metallopeptidase ImmA.
  
  
 0.469
ilvC_2
Ketol-acid reductoisomerase.
  
    0.462
OPJ65754.1
Transposase from transposon Tn916; Belongs to the 'phage' integrase family.
 
 
 
 0.443
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.438
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.