EPUL_003385 protein (Erysiphe pulchra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EPUL_003385

Uncharacterized protein. (88 aa)

Predicted Functional Partners:

EPUL_002091

0.942

EPUL_005586

0.930

EPUL_004302

0.930

EPUL_003315

0.929

EPUL_006176

0.925

EPUL_004934

0.922

EPUL_000759

0.917

EPUL_000637

0.915

EPUL_003030

0.913

EPUL_000460

0.913

Your Current Organism:

Erysiphe pulchra

NCBI taxonomy Id: 225359
Other names: E. pulchra, Microsphaera pulchra

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPUL_000460	EPUL_000637	A0A2S4PZU1	A0A2S4PYF9	Ribosomal protein S16.	Uncharacterized protein.	0.999
EPUL_000460	EPUL_000759	A0A2S4PZU1	A0A2S4PWJ8	Ribosomal protein S16.	Uncharacterized protein.	0.999
EPUL_000460	EPUL_002091	A0A2S4PZU1	A0A2S4PTX1	Ribosomal protein S16.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.990
EPUL_000460	EPUL_003030	A0A2S4PZU1	A0A2S4PTD6	Ribosomal protein S16.	Uncharacterized protein.	0.999
EPUL_000460	EPUL_003315	A0A2S4PZU1	A0A2S4PTT3	Ribosomal protein S16.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.969
EPUL_000460	EPUL_003385	A0A2S4PZU1	A0A2S4PW45	Ribosomal protein S16.	Uncharacterized protein.	0.913
EPUL_000460	EPUL_004302	A0A2S4PZU1	A0A2S4PS34	Ribosomal protein S16.	37S ribosomal protein S25, mitochondrial.	0.915
EPUL_000460	EPUL_004934	A0A2S4PZU1	A0A2S4PKC1	Ribosomal protein S16.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
EPUL_000460	EPUL_005586	A0A2S4PZU1	A0A2S4PJC6	Ribosomal protein S16.	Ribosomal_S7 domain-containing protein.	0.999
EPUL_000460	EPUL_006176	A0A2S4PZU1	A0A2S4PNY9	Ribosomal protein S16.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
EPUL_000637	EPUL_000460	A0A2S4PYF9	A0A2S4PZU1	Uncharacterized protein.	Ribosomal protein S16.	0.999
EPUL_000637	EPUL_000759	A0A2S4PYF9	A0A2S4PWJ8	Uncharacterized protein.	Uncharacterized protein.	0.999
EPUL_000637	EPUL_002091	A0A2S4PYF9	A0A2S4PTX1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.995
EPUL_000637	EPUL_003030	A0A2S4PYF9	A0A2S4PTD6	Uncharacterized protein.	Uncharacterized protein.	0.999
EPUL_000637	EPUL_003315	A0A2S4PYF9	A0A2S4PTT3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.966
EPUL_000637	EPUL_003385	A0A2S4PYF9	A0A2S4PW45	Uncharacterized protein.	Uncharacterized protein.	0.915
EPUL_000637	EPUL_004302	A0A2S4PYF9	A0A2S4PS34	Uncharacterized protein.	37S ribosomal protein S25, mitochondrial.	0.917
EPUL_000637	EPUL_004934	A0A2S4PYF9	A0A2S4PKC1	Uncharacterized protein.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
EPUL_000637	EPUL_005586	A0A2S4PYF9	A0A2S4PJC6	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.998
EPUL_000637	EPUL_006176	A0A2S4PYF9	A0A2S4PNY9	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999