OEI81213.1 protein (Formosa algae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OEI81213.1

TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)

Predicted Functional Partners:

OEI81212.1

0.955

OEI81211.1

0.952

OEI81210.1

0.946

OEI81209.1

0.925

OEI81207.1

0.869

OEI81208.1

0.862

Your Current Organism:

Formosa algae

NCBI taxonomy Id: 225843
Other names: CIP 107684, F. algae, Formosa algae Ivanova et al. 2004 emend. Nedashkovskaya et al. 2006, KCTC 12364, KMM 3553

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEI81207.1	OEI81208.1	AST99_05995	AST99_06000	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
OEI81207.1	OEI81209.1	AST99_05995	AST99_06005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
OEI81207.1	OEI81210.1	AST99_05995	AST99_06010	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OEI81207.1	OEI81211.1	AST99_05995	AST99_06015	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
OEI81207.1	OEI81212.1	AST99_05995	AST99_06020	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
OEI81207.1	OEI81213.1	AST99_05995	AST99_06025	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
OEI81208.1	OEI81207.1	AST99_06000	AST99_05995	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
OEI81208.1	OEI81209.1	AST99_06000	AST99_06005	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
OEI81208.1	OEI81210.1	AST99_06000	AST99_06010	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OEI81208.1	OEI81211.1	AST99_06000	AST99_06015	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
OEI81208.1	OEI81212.1	AST99_06000	AST99_06020	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
OEI81208.1	OEI81213.1	AST99_06000	AST99_06025	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
OEI81209.1	OEI81207.1	AST99_06005	AST99_05995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OEI81209.1	OEI81208.1	AST99_06005	AST99_06000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OEI81209.1	OEI81210.1	AST99_06005	AST99_06010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
OEI81209.1	OEI81211.1	AST99_06005	AST99_06015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OEI81209.1	OEI81212.1	AST99_06005	AST99_06020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
OEI81209.1	OEI81213.1	AST99_06005	AST99_06025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
OEI81210.1	OEI81207.1	AST99_06010	AST99_05995	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
OEI81210.1	OEI81208.1	AST99_06010	AST99_06000	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992

page 1 of 3

Network Stats

number of nodes:

3

number of edges:

3

average node degree:

2

avg. local clustering coefficient:

1

expected number of edges:

2

PPI enrichment p-value:

0.213

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1902600

Proton transmembrane transport

5 of 45

1.91

2.6

1.86e-06

GO:0044237

Cellular metabolic process

11 of 2827

0.45

0.37

0.0017

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015453

Oxidoreduction-driven active transmembrane transporter activity

8 of 48

2.08

5.24

2.61e-13

GO:0009055

Electron transfer activity

10 of 148

1.69

3.92

6.84e-14

GO:0016675

Oxidoreductase activity, acting on a heme group of donors

5 of 25

2.16

3.55

3.77e-08

GO:0016679

Oxidoreductase activity, acting on diphenols and related substances as donors

4 of 9

2.51

3.51

1.88e-07

GO:0004129

Cytochrome-c oxidase activity

4 of 21

2.14

2.73

2.88e-06

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0070469

Respirasome

3 of 20

2.04

1.64

0.00059

GO:0005886

Plasma membrane

8 of 1351

0.64

0.47

0.0047

GO:0016021

Integral component of membrane

9 of 1807

0.56

0.42

0.0047

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:6359

Oxidoreduction-driven active transmembrane transporter activity, and Cytochrome c

10 of 49

2.17

7.11

2.00e-18

CL:6364

Mixed, incl. Cytochrome-c oxidase activity, and Oxidoreductase activity, acting on diphenols and related substances as donors

8 of 36

2.21

6.0

1.81e-14

CL:6356

Oxidative phosphorylation, and Cytochrome c

11 of 95

1.93

5.86

2.00e-18

CL:6366

Oxidoreduction-driven active transmembrane transporter activity, and Peptidase M16 inactive domain

7 of 25

2.31

5.73

5.18e-13

CL:6397

Respiratory chain, and Insulinase (Peptidase family M16)

3 of 7

2.49

2.36

3.68e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00190

Oxidative phosphorylation

9 of 101

1.81

4.39

9.07e-14

map01100

Metabolic pathways

11 of 2600

0.49

0.41

0.00029

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0070469

Respirasome

6 of 66

1.82

2.94

7.36e-08

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0679

Respiratory chain

2 of 11

2.12

0.95

0.0167

KW-0349

Heme

3 of 80

1.44

0.82

0.0167

KW-0408

Iron

4 of 169

1.24

0.75

0.0155

KW-0479

Metal-binding

5 of 428

0.93

0.59

0.0167

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00116

Cytochrome C oxidase subunit II, periplasmic domain

4 of 4

2.86

3.73

1.30e-07

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About