Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OEI79029.1DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. (810 aa)    
Predicted Functional Partners:
OEI79030.1
Ku protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.909
OEI80059.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.883
OEI79031.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.735
OEI79040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.680
OEI79817.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.673
OEI79456.1
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.671
OEI81101.1
DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.667
nusA
Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.
     
  0.662
OEI81251.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.633
Your Current Organism:
Formosa algae
NCBI taxonomy Id: 225843
Other names: CIP 107684, F. algae, Formosa algae Ivanova et al. 2004 emend. Nedashkovskaya et al. 2006, KCTC 12364, KMM 3553
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