STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_00095Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (455 aa)    
Predicted Functional Partners:
Sps_00094
PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
 
 
 0.988
Sps_00090
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; 'PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2'; 'TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family'.
 
  
 0.969
Sps_00098
Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3.
 
 
 0.969
Sps_00096
Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.968
flgK
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK.
 
  
 0.966
Sps_03788
PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
 
 
 0.964
Sps_00107
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.959
Sps_00115
Flagellar motor switch protein; PFAM: FliG middle domain; FliG C-terminal domain; FliG N-terminal domain; TIGRFAM: flagellar motor switch protein FliG.
 
  
 0.956
Sps_03794
Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3.
 
 
 0.956
Sps_03804
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.956
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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