STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_00197PFAM: AbgT putative transporter family; TIGRFAM: p-Aminobenzoyl-glutamate transporter family. (538 aa)    
Predicted Functional Partners:
Sps_00704
Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Pyridine nucleotide-disulphide oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain; Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; 'TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form'; Belongs to the GcvT family.
   
    0.509
Sps_03562
Putative membrane protein; PFAM: C4-dicarboxylate anaerobic carrier.
  
     0.504
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
  
    0.465
Sps_02201
Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase.
  
  
 0.450
Sps_00198
Transcriptional regulator, AraC family; PFAM: Helix-turn-helix domain.
       0.449
Sps_00520
Hypothetical protein.
  
     0.430
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.