STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_00209DNA-binding protein with HTH domain; 'PFAM: Bacterial regulatory proteins, luxR family; Autoinducer binding domain'. (244 aa)    
Predicted Functional Partners:
Sps_00211
N-acyl-L-homoserine lactone synthetase; PFAM: Autoinducer synthetase.
 
  
 0.956
Sps_04465
N-acyl-L-homoserine lactone synthetase; PFAM: Autoinducer synthetase.
 
  
 0.873
Sps_01716
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
    
 
 0.749
Sps_00958
'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'.
   
 
 0.711
Sps_02870
'PFAM: Four helix bundle sensory module for signal transduction; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'.
   
 
 0.711
Sps_03007
Cysteine desulfurase family protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; Aminotransferase class-V.
   
 
 0.618
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
    
 
 0.593
Sps_01639
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
    
 
 0.593
Sps_02759
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
    
 
 0.593
Sps_04278
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily.
    
 
 0.593
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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