STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_00288ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (667 aa)    
Predicted Functional Partners:
Sps_00286
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 0.999
Sps_00287
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 0.999
hmuV
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.972
Sps_04902
ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 
 0.969
Sps_04789
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.963
Sps_04781
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 
 0.958
Sps_00285
'TIGRFAM: siderophore ferric iron reductase, AHA_1954 family'.
 
     0.903
Sps_00284
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
 
   
 0.824
Sps_04910
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
 
  
 0.627
Sps_00283
DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain; GyrI-like small molecule binding domain.
 
  
 0.467
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.