STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_00580Marine proteobacterial sortase target protein; PFAM: von Willebrand factor type A domain; Vault protein inter-alpha-trypsin domain; TIGRFAM: marine proteobacterial sortase target protein. (753 aa)    
Predicted Functional Partners:
Sps_00581
PFAM: Sortase family; 'TIGRFAM: sortase, marine proteobacterial type; LPXTG-site transpeptidase (sortase) family protein'.
 
  
 0.979
Sps_00579
PFAM: OmpA family; TIGRFAM: proteobacterial sortase system peptidoglycan-associated protein.
 
    0.957
Sps_00576
Proteobacterial dedicated sortase system histidine kinase; 'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'; TIGRFAM: proteobacterial dedicated sortase system histidine kinase.
 
     0.741
Sps_00577
'PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal'; TIGRFAM: proteobacterial dedicated sortase system response regulator.
 
     0.672
Sps_00901
PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein.
 
  
 0.618
Sps_02396
PFAM: OmpA-like transmembrane domain; OmpA family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
    0.584
Sps_05214
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: Glycine zipper; OmpA family.
  
    0.584
Sps_00578
Hypothetical protein.
       0.478
Sps_01360
Hypothetical protein.
   
    0.416
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.