STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_01117PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter. (323 aa)    
Predicted Functional Partners:
Sps_01116
PFAM: MarR family.
  
  
 0.718
Sps_00959
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
    0.611
Sps_00920
Copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; Putative metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; 'TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase'.
  
  
 0.434
Sps_02036
Copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; 'TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC'.
  
  
 0.434
Sps_01118
Putative dehydrogenase; 'PFAM: Oxidoreductase family, NAD-binding Rossmann fold'.
  
    0.423
Sps_00181
'PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain'; 'TIGRFAM: glutathione-disulfide reductase, animal/bacterial'.
   
    0.422
Sps_04498
'PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain'.
   
    0.422
Sps_03174
PFAM: MerR HTH family regulatory protein; TIGRFAM: Zn(II)-responsive transcriptional regulator.
 
   
 0.417
Sps_05307
PFAM: Protein of unknown function (DUF4240).
   
 0.410
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.