STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_01296Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase. (389 aa)    
Predicted Functional Partners:
Sps_01297
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
 0.796
Sps_04287
PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 
 0.785
Sps_01295
GMP synthase family protein; PFAM: Glutamine amidotransferase class-I.
 
     0.695
Sps_01298
'PFAM: Glutamine synthetase, catalytic domain'.
 
   
 0.694
Sps_02306
Glycosyl transferase group 1; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1.
   
    0.656
pckA
ATP-dependent phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
   
  
 0.467
Sps_00322
PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain; 'TIGRFAM: glycine radical enzyme activase, YjjW family'.
  
  
 0.462
Sps_03565
Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
  
  
 0.462
Sps_04602
PFAM: Radical SAM superfamily; TIGRFAM: AmmeMemoRadiSam system radical SAM enzyme.
  
  
 0.462
Sps_00220
Polyketide synthase family protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'.
   
 
 0.441
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.