STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_01599Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor. (367 aa)    
Predicted Functional Partners:
Sps_04419
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family.
 
  
 0.963
Sps_04420
PFAM: Tripartite tricarboxylate transporter TctB family.
 
  
 0.948
Sps_04421
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor.
  
  
 
0.910
Sps_04418
Signal transduction histidine kinase regulating citrate/malate metabolism; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Sensor_kinase_SpoOB-type, alpha-helical domain; Sensory domain of two-component sensor kinase'.
 
    0.687
Sps_04417
Response regulator of citrate/malate metabolism; PFAM: Response regulator receiver domain.
 
    0.676
Sps_02666
PFAM: DctM-like transporters; 'TIGRFAM: TRAP transporter, 4TM/12TM fusion protein'.
  
     0.560
Sps_02667
PFAM: NMT1/THI5 like; 'TIGRFAM: TRAP transporter solute receptor, TAXI family'.
  
   
 0.518
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.