STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_01677Hypothetical protein. (164 aa)    
Predicted Functional Partners:
Sps_01675
PFAM: Uncharacterized protein conserved in bacteria (DUF2063).
 
  
 0.918
Sps_01676
PFAM: Protein of unknown function (DUF692); Belongs to the UPF0276 family.
 
  
 0.871
Sps_01678
Hypothetical protein.
       0.773
Sps_01564
PFAM: DoxX.
 
  
 0.768
Sps_02734
Putative membrane protein; PFAM: DoxX.
 
  
 0.715
Sps_01567
YKOF-like protein; PFAM: YKOF-related Family.
  
     0.653
Sps_02732
PFAM: Protein of unknown function (DUF692).
 
  
 0.644
dusC
tRNA-U20a,U20b-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.543
Sps_05483
PFAM: Protein of unknown function (DUF692).
 
  
 0.509
Sps_01568
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
  
 0.471
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.