STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_02007Putative NADH-flavin reductase; PFAM: NADH(P)-binding. (212 aa)    
Predicted Functional Partners:
Sps_02584
Transcriptional regulator/sugar kinase; PFAM: ROK family.
   
    0.828
Sps_04697
PFAM: AAA domain.
   
    0.713
Sps_00547
PFAM: ZIP Zinc transporter.
   
    0.623
Sps_03173
PFAM: Predicted permease.
   
    0.623
Sps_04536
PFAM: Predicted permease.
   
    0.623
Sps_03906
Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix.
 
  
 0.622
Sps_02006
Transcriptional regulator; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
 
     0.601
Sps_03218
PFAM: Iron-containing alcohol dehydrogenase.
  
  
 0.596
Sps_00107
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.594
Sps_03804
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.594
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.