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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_02090PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (188 aa)    
Predicted Functional Partners:
Sps_05343
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.802
Sps_05355
MSHA-type pilus biogenesis protein MshL; PFAM: Secretin N-terminal domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: pilus (MSHA type) biogenesis protein MshL.
 
  
 0.801
Sps_05357
Hypothetical protein.
 
   
 0.801
Sps_05359
Hypothetical protein.
 
   
 0.790
Sps_05342
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.789
Sps_05340
PA14 domain-containing protein; PFAM: PA14 domain.
 
     0.775
Sps_05351
Type II secretory pathway, component PulF; 'PFAM: Type II secretion system (T2SS), protein F'.
 
  
 0.751
Sps_05353
Hypothetical protein.
 
     0.744
Sps_05341
Hypothetical protein.
 
   
 0.733
Sps_05449
'PFAM: Type II secretion system (T2SS), protein J; Type IV pilin N-term methylation site GFxxxE'; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; type II secretion system protein J.
 
 
 0.719
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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