STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_02277Flp pilus assembly protein TadD; PFAM: TPR repeat. (250 aa)    
Predicted Functional Partners:
Sps_02274
PFAM: von Willebrand factor type A domain.
 
   
 0.829
Sps_02284
TIGRFAM: Flp pilus assembly protein CpaB.
 
  
 0.792
Sps_02281
Flp pilus assembly protein, ATPase CpaE; PFAM: AAA domain.
 
  
 0.788
Sps_02276
PFAM: TadE-like protein.
     
 0.776
Sps_02275
Hypothetical protein.
       0.773
Sps_01004
Hypothetical protein; PFAM: Secretion system effector C (SseC) like family.
  
 
 0.751
Sps_05560
Hypothetical protein; PFAM: Secretion system effector C (SseC) like family.
  
 
 0.751
Sps_02283
Flp pilus assembly protein, secretin CpaC; PFAM: Bacterial type II and III secretion system protein; Pilus formation protein N terminal region; Belongs to the bacterial secretin family.
 
  
 0.708
Sps_02278
'PFAM: Type II secretion system (T2SS), protein F'.
 
  
 0.691
Sps_02279
Flp pilus assembly protein TadB; 'PFAM: Type II secretion system (T2SS), protein F'.
 
  
 0.684
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.