STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_02896Pyroglutamyl peptidase I. (390 aa)    
Predicted Functional Partners:
Sps_01854
Outer membrane protein (porin); PFAM: Gram-negative porin.
  
     0.719
Sps_01902
PFAM: Cytochrome c7; 'TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family'.
  
     0.715
Sps_04966
Outer membrane protein (porin); PFAM: Gram-negative porin.
  
     0.715
Sps_01839
Nuclease-like protein,protein kinase family protein; PFAM: Protein kinase domain; Nuclease-related domain.
  
     0.699
Sps_02634
Hypothetical protein.
  
     0.693
Sps_02202
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.692
Sps_01900
PFAM: Cytochrome c7; 'TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family'.
  
     0.688
Sps_01859
PFAM: Uncharacterized protein conserved in bacteria (DUF2057); Belongs to the UPF0319 family.
  
     0.679
Sps_00602
PFAM: Protein of unknown function (DUF3466).
  
     0.675
Sps_03202
'PFAM: Transcriptional regulatory protein, C terminal'.
  
     0.671
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.