STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_03335Putative acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; Glycosyl transferase family 2. (571 aa)    
Predicted Functional Partners:
Sps_03339
Putative exporter; PFAM: MMPL family.
 
  
 0.969
Sps_03330
Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
 
 
 0.956
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
 
 0.956
Sps_03338
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
    0.956
Sps_03337
PFAM: Thioesterase-like superfamily; 'TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family'.
 
    0.955
Sps_03332
Putative membrane protein.
 
     0.954
Sps_03333
acyl-CoA synthetase/AMP-acid ligase; PFAM: AMP-binding enzyme.
 
   
 0.954
Sps_03328
'PFAM: Beta-ketoacyl synthase, N-terminal domain'.
 
    0.953
Sps_03334
3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain.
 
     0.953
Sps_03340
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
 
   
 0.953
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.