STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_03461PFAM: Phage Mu protein F like protein. (480 aa)    
Predicted Functional Partners:
Sps_03459
PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein.
 
  
 0.966
Sps_03462
Mu-like prophage protein gp29; PFAM: Protein of unknown function (DUF935).
    0.958
Sps_03463
Mu-like prophage FluMu protein gp28.
 
    0.953
Sps_03465
Hypothetical protein.
 
     0.953
Sps_03464
PFAM: Protein of unknown function (DUF3486).
 
     0.951
Sps_03453
PFAM: Mu-like prophage I protein.
 
    0.845
Sps_03470
PFAM: Glycosyl hydrolase 108; Predicted Peptidoglycan domain.
 
     0.842
Sps_03452
Hypothetical protein.
 
     0.834
Sps_03477
PFAM: Protein of unknown function (DUF3164).
 
    0.833
Sps_03451
PFAM: Mu-like prophage major head subunit gpT.
 
     0.830
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.