STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_03967Hypothetical protein. (243 aa)    
Predicted Functional Partners:
Sps_03968
Hypothetical protein.
  
 
 0.934
Sps_03965
PFAM: Outer membrane protein beta-barrel domain.
       0.773
Sps_03966
Hypothetical protein.
       0.773
Sps_03969
Hypothetical protein.
       0.773
Sps_01159
Hypothetical protein.
  
 
 0.723
Sps_01927
Hypothetical protein.
  
 
 0.723
Sps_02880
Hypothetical protein.
  
 
 0.723
Sps_00777
TIGRFAM: T1SS-143 repeat domain; type I secretion C-terminal target domain.
   
    0.418
Sps_02539
Type II secretion system protein B.
   
    0.418
Sps_03097
Putative calcium-binding protein; PFAM: von Willebrand factor type A domain; Hemolysin-type calcium-binding repeat (2 copies); Calx-beta domain.
   
    0.418
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.