STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_04012PFAM: Sulfatase. (91 aa)    
Predicted Functional Partners:
Sps_04021
TIGRFAM: anaerobic sulfatase-maturating enzyme; radical SAM additional 4Fe4S-binding SPASM domain.
 
   0.884
Sps_03156
Anaerobic sulfatase-maturating enzyme; PFAM: Iron-sulfur cluster-binding domain; Radical SAM superfamily; 4Fe-4S single cluster domain; TIGRFAM: anaerobic sulfatase-maturating enzyme; radical SAM additional 4Fe4S-binding SPASM domain.
 
   0.882
Sps_04020
Hypothetical protein.
 
   0.845
Sps_02069
Hypothetical protein; PFAM: Sulfatase-modifying factor enzyme 1.
 
 
   0.803
Sps_03160
Arylsulfatase A family protein; PFAM: Sulfatase.
 
   
 0.781
Sps_04011
'PFAM: Nucleoside-specific channel-forming protein, Tsx'.
       0.707
Sps_00220
Polyketide synthase family protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'.
  
 
 0.631
Sps_04013
Hypothetical protein.
       0.618
Sps_04014
Hypothetical protein.
       0.618
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.599
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.