STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_04024Hypothetical protein. (265 aa)    
Predicted Functional Partners:
Sps_04023
PFAM: Putative MetA-pathway of phenol degradation.
 
     0.890
Sps_04025
Arylsulfatase A family protein; PFAM: C-terminal region of aryl-sulfatase; Sulfatase.
 
     0.850
Sps_04749
PFAM: Protein of unknown function (DUF1214); Protein of unknown function (DUF1254).
 
     0.771
Sps_04531
Arylsulfatase A family protein; PFAM: C-terminal region of aryl-sulfatase; Sulfatase.
 
     0.759
Sps_03160
Arylsulfatase A family protein; PFAM: Sulfatase.
 
     0.751
Sps_04027
PFAM: Protein of unknown function (DUF3604).
 
     0.704
Sps_04205
PFAM: Surface antigen.
  
     0.685
Sps_01499
'PFAM: Carbohydrate-selective porin, OprB family'.
  
   
 0.675
Sps_04030
PFAM: Doubled CXXCH motif (Paired_CXXCH_1); Cytochrome c554 and c-prime; TPR repeat; Cytochrome c552; TIGRFAM: doubled CXXCH domain.
  
     0.668
Sps_03157
PFAM: Protein of unknown function (DUF1214); Protein of unknown function (DUF1254).
 
     0.641
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.