STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_04137Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (861 aa)    
Predicted Functional Partners:
Sps_02364
N-acetyl-beta-hexosaminidase; 'PFAM: Putative carbohydrate binding domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain'.
 
  
 0.972
Sps_04778
Hypothetical protein; PFAM: Chitin binding domain.
 
  
 0.914
Sps_01355
Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain.
 
 
 0.906
nagZ
Beta-glucosidase-like glycosyl hydrolase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
   
 
 0.903
Sps_04640
PFAM: Phosphotransferase enzyme family.
     
  0.900
Sps_01460
Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain.
 
 
 0.892
Sps_03040
Hypothetical protein; PFAM: Glycosyl transferase family 1; TIGRFAM: conserved hypothetical protein.
   
  
 0.853
Sps_02581
'PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain; Chitinase A, N-terminal domain'.
  
   
 0.807
Sps_00154
Hypothetical protein.
   
  
 0.804
Sps_00531
Hypothetical protein; PFAM: Carbohydrate binding domain; Chitin binding domain.
  
   
 0.762
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.