STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sps_04829Type II secretory pathway, component PulF; 'PFAM: Type II secretion system (T2SS), protein F'. (340 aa)    
Predicted Functional Partners:
Sps_04830
PFAM: Type II/IV secretion system protein.
 
 
 0.944
Sps_04831
Hypothetical protein.
  
 
 0.875
Sps_05454
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.769
Sps_05352
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; 'PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein'.
 
 
 0.763
Sps_05385
Type IV-A pilus assembly ATPase PilB; 'PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein'; TIGRFAM: type IV-A pilus assembly ATPase PilB.
  
 
 0.726
Sps_01645
DNA internalization-related competence protein ComEC/Rec2; PFAM: Competence protein; Domain of unknown function (DUF4131); Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.718
Sps_01862
PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein.
 
  
 0.686
Sps_05412
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
   
 
 0.685
Sps_05414
'PFAM: Pilus assembly protein, PilO'.
   
 
 0.685
Sps_05415
PFAM: Fimbrial assembly protein (PilN).
   
 
 0.672
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.